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SSA 1.0

Netbook Software Downloads » Education Softwares » SSA 1.0

Date Added:

Oct 27, 2010 03:42 AM

Publisher's Description:

SSA is a program for inferring maximum likelihood phylogenies from DNA sequences. Two versions of the program are available: one which assumes a molecular clock and one which does not make this assumption. The method for searching the space of trees for the ML tree is based on a simulated-annealing type algorithm and is described in the reference above. The program implements Felsenstein's F84 model of nucleotide substitution and associated sub-models. The program estimates the ML tree and branch lengths, and can optionally estimate the transversion/transversion ratio. Upon termination, the program returns the k trees of highest likelihood found during the search, where k can be set by the user.

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Documentation only (pdf format)

SSA program for Sun/Sparc (executable, example, and documentation)

SSA program for AIX (executable, example, and documentation)

SSA program for Linux (executable, example, and documentation)

SSA program for PC's (executable, example, and documentation)

Source code: I am happy to provide the source code for the program to anyone who has the book Numerical Recipes in C by Press et al. (and thus permission to use source code derived from it). Please e-mail me with your requests.

Acknowledgements

Continued development of SSA is based upon work supported by the National Science Foundation under Grant No. 0104290. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Documentation:

http://www.stat.osu.edu/~lkubatko/software/ssa/ssa.html

Last Download:

May 22, 2012 05:37 PM

Downloads:

32

OS:

Windows

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SSA 1.0

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