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CLC Main Workbench 6.6.5


Ultrabook / Netbook Software Downloads » Image Editing / Graphic Design Tools » CLC Main Workbench 6.6.5
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Date Added:

Aug 04, 2012 03:23 AM

Publisher's Description:

CLC Main Workbench aggregates user friendly gene expression analysis with all features of CLC Protein Workbench, CLC RNA Workbench, and CLC DNA Workbench in one integrated software package.

CLC Main Workbench creates a software environment enabling users to make a large number of advanced DNA, RNA, and protein sequence analyses, combined with gene expression analysis, smooth data management, and excellent graphical viewing and output options.

Product features

Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis - all listed below:
Expression analysis including digital gene expression

* Support for both microarray- and sequencing-based (RNA-Seq) expression data
* Visualization: Interactive heat map, table and scatter plot views
* Transformation and normalization tools
* Quality control tools including principal component analysis, MA- and boxplots
* Experimental design tools for two- or multiple group comparisons
* T-tests and ANOVA analysis with support for paired/repeated measures
* Multiple testing corrected p-values (Bonferroni and/or FDR)
* Clustering algorithms: hierarchical clustering, k-means and Partitioning Around Medoids (PAM) with support for various distance and linkage measures.
* Ability to import NetAffx annotation arrays and adding annotation to experiments
* Tools for Gene Set Enrichment Analysis (GSEA) and for Hyper-Geometric based tests for overrepresented annotation categories (e.g. 'GO'stats or specific protein pathways).
* Ability to work with Expression Arrays and RNA-seq results at the same time, enabling comparison of results

DNA sequence analysis

* Editor for graphically and algorithmically advanced primer design
* In silico PCR
* Assembly of DNA sequence data
* Multiplexing - Process Tagged Sequences has an option to filter away groups with few sequences.
* Molecular cloning
* Gateway Cloning
* Automatic SNP annotation of sequences
* Local complexity region analyses
* Reverse translation from protein to gene, based on translation tables from a number of species
* Advanced restriction enzyme analysis and management
* Dot plot based analyses
* DNA statistics report including a number of characteristics of a given molecule
* NCBI sequence data search
* Access to web info from PubMed

Documentation:

http://www.clcbio.com/index.php?id=92

Last Download:

Jul 19, 2017 12:29 AM

Downloads:

127

OS:

Windows

Rating:

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CLC Main Workbench 6.6.5


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